ANTICHAOS AND ADAPTATION PDF

Shaktilabar The basic answer seems to be that they develop a frozen core, or a connected mesh of elements that are effectively locked into either an active or inactive state. Taken as models of genomic systems, systems poised between order and chaos come close to fitting many features of cellular differentiation during ontogeny-features common to organisms that have been diverging evolutionarily for more than million years. They consist of N elements linked by K inputs per element; they are autonomous because none of the inputs comes from outside the system. One phenomenon found in some cases has already caught the popular imagination: In networks of high connectivity, order will also arise if certain biases exist in the Boolean switching rules. In canalizing networks, order emerges because a large fraction of the binary elements falls into a stable, frozen state.

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Zuluramar If these results hold up under further scrutiny, then the liquid transition between ordered and chaotic organizations may be the characteristic target of selection for systems able to coordinate complex tasks and adapt. If a binary element has K inputs, then there are 2K possible combinations of inputs it could receive. Alternatively, the AND function declares that a variable will become active only if all its inputs are currently active.

Antichaos and Adaptation Biological evolution may have been shaped by more than just natural selection. These characteristics inspired Langton to suggest that parallel-processing networks poised at the edge of chaos might be capable of extremely complex computations. These expectations are met by real genetic systems. Most attractors claim relatively few states. How much order and chaos do the genomic systems of viruses, bacteria, plants and animals exhibit?

Traditional statistical mechanics, in contrast, averages over all the possible states of a single system. Antichaos and adaptation.

Minimal perturbations cause numerous small avalanches and a few large avalanches. The approach begins by idealizing the behavior of each element in the system-each gene, in the case of the genome-as a simple binary on or off variable. Even if each state transition took only one microsecond, it would take billions of times longer than the age of the universe for the network to traverse its attractor completely.

They consist of N elements linked by K inputs per element; they are autonomous because none of the inputs comes from outside the system. Selection has molded, but was not compelled to invent, the native coherence of ontogeny, or biological development. The stability of attractors subjected to minimal perturbations can differ.

If a cell type is an attractor, it should be possible to predict anttichaos many cell types could appear in an organism. If such a change does not move a network outside its original basin of attraction, the network will eventually return to its original state cycle.

And homeostasis, as I shall discuss presently, is a property of all living things. The function specifies the activity of a variable in response to all the possible combinations of activities in the input variables.

It has been more than 20 sdaptation since I discovered those features of random networks, and they still surprise me. Biology is filled with complex systems: We have begun studying the question by making Boolean networks play a variety of games with one another [see box on opposite page].

Because all the elements act simultaneously, the system is also said to amd synchronous. Therefore, there are 2 to the 2K power possible Boolean switching rules for that element. If the hypotheses continue to hold up, biologists may have the beginnings of a comprehensive theory of genomic organization, behavior and capacity to evolve. Given that interpretation, the spontaneous order arising in networks with low connectivity and canalizing Boolean functions sets up several predictions about real biological systems.

Moreover, about two thirds of all the possible states fall within the basins of only a few attractors-sometimes of just amtichaos. One such rule is the Boolean OR function, which says that a variable will be active if any of its input variables is active.

A structural perturbation is a permanent mutation in the connections or in the Boolean functions of a network. Changes in activity should be restricted to small, isolated islands of genes. The OR function is a typical canalizing function.

The length of an attractor in a genome antichaksgenes would be about states. Kauffman Antichaos and Adaptation. Avalanches of damage or changed activity caused by the mutation should not propagate to the vast majority of genes in the regulatory network.

One interpretation of the meaning of antichaos in complex systems has particular relevance to biology: The succession of states is called the trajectory of the network. When K drops to two, however, the properties of random Boolean networks change abruptly: Because its behavior is determined precisely, the system proceeds to the same successor state as it did before. Poised systems will therefore typically adapt to a changing environment gradually, but if necessary, they can occasionally change rapidly.

Since Darwin, biologists have seen natural selection as virtually the sole source of that order. Since then, mathematicians, computer scientists and solid state physicists, among them my many colleagues at the Santa Fe Institute in New Mexico, have made substantial progress.

In fact, by conservative estimates, the number of cell types appears to increase at most as a linear function. He has related network behavior to the phases of matter: These systems are named after George Boole, the English inventor of an algebraic approach to mathematical logic.

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Antichaos and adaptation.

Zuluramar If these results hold up under further scrutiny, then the liquid transition between ordered and chaotic organizations may be the characteristic target of selection for systems able to coordinate complex tasks and adapt. If a binary element has K inputs, then there are 2K possible combinations of inputs it could receive. Alternatively, the AND function declares that a variable will become active only if all its inputs are currently active. Antichaos and Adaptation Biological evolution may have been shaped by more than just natural selection.

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ANTICHAOS AND ADAPTATION PDF

Vorn We may have begun to understand evolution as the marriage of selection and self-organization. Packard of the University of Illinois at Champaign-Urbana may have been the first person to ask whether selection could drive parallel-processing Boolean networks to the edge of chaos. Differentiation, according to this model, would be a response to perturbations that carried a cell into the basin of attraction for another cell type. Minimal perturbations in those systems cause avalanches of damage that can alter the behavior of most of the unfrozen elements.

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